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The Binding Element Searching Tool is an online genome-wide searching tool.

Users can build up a customized hidden markov model (HMM) via HMMER program by upload or paste a set of element sequences containing specific transcription factor binding site (in FASTA format) and use this model to search the multi-species promoter region (human, mouse and rat) retrieved from the EnsMart system annotated by ensembl project. Results can be further analyzed by gene function and expression pattern via EnsMart interior linking to Gene Ontology and linkout to AFFY database.

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